Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpsGeneral stress protein 20U Dps; Belongs to the Dps family. (153 aa)    
Predicted Functional Partners:
ABC1465
Conserved hypothetical protein.
 
     0.768
ABC2428
2-cys peroxiredoxin.
 
  
 0.687
prkA
Serine protein kinase.
   
    0.665
ABC0534
Multimeric flavodoxin WrbA; Belongs to the WrbA family.
  
  
 0.643
ABC3188
Conserved hypothetical protein.
  
  
 0.643
ABC1466
Conserved hypothetical protein.
       0.642
ohrB
Organic hydroperoxide resistance protein.
  
  
 0.639
ABC2118
Conserved hypothetical protein.
  
  
 0.639
hpf
Ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.638
ABC2766
General stress protein.
  
  
 0.605
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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