STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpDPenicillin-binding protein. (614 aa)    
Predicted Functional Partners:
cwlC
N-acetylmuramoyl-L-alanine amidase.
   
 
 0.761
ABC2800
Stage V sporulation protein E; Belongs to the SEDS family.
  
 
 
 0.698
ABC3821
Stage V sporulation protein E; Belongs to the SEDS family.
  
 
 
 0.676
ABC2799
Cell division protein FtsW; Belongs to the SEDS family.
  
 
 
 0.669
gpsB
Cell division initiation protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
   
 
 0.645
ABC1471
Conserved hypothetical protein.
 
     0.624
ABC3063
Metalloendopeptidase.
 
   
 0.617
sipV
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.610
spoVE
Stage V sporulation protein E; Belongs to the SEDS family.
  
 
 
 0.607
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.595
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.