Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC1486GntR family transcriptional regulator. (234 aa)    
Predicted Functional Partners:
argH1
Argininosuccinate lyase.
       0.701
ABC0475
GntR family transcriptional regulator.
  
    0.696
ABC4039
GntR family transcriptional regulator.
  
    0.677
ABC4038
GntR family transcriptional regulator.
  
    0.643
ABC0472
GntR family transcriptional regulator.
  
    0.624
ABC0978
GntR family transcriptional regulator.
  
    0.604
ABC2722
Transcriptional regulator.
  
    0.583
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.561
ABC1488
GntR family transcriptional regulator.
 
    
0.560
ABC1485
Sodium:proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.549
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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