Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoVRStage V sporulation protein R. (463 aa)    
Predicted Functional Partners:
prkA
Serine protein kinase.
 
  
 0.983
ABC1477
Conserved hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.983
spoVB
Stage V sporulation protein B.
   
  
 0.792
spoIIID
Stage III sporulation protein D.
   
  
 0.690
ABC1499
Phosphomannomutase.
       0.686
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.669
spmA
Spore maturation protein A.
   
  
 0.650
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
   
 0.644
cotE
Spore coat protein E.
  
  
 0.634
etfA
Electron transfer flavoprotein alpha subunit.
      
 0.627
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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