STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVRStage V sporulation protein R. (463 aa)    
Predicted Functional Partners:
prkA
Serine protein kinase.
 
  
 0.986
ABC1477
Conserved hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.980
cotE
Spore coat protein E.
  
  
 0.708
spoIVFB
Stage IV sporulation protein FB.
  
  
 0.674
spoIIID
Stage III sporulation protein D.
   
  
 0.658
bofA
Inhibition of the pro-sigma-K processing machinery.
  
   
 0.644
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.639
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
   
 0.616
ABC1469
Conserved hypothetical protein.
 
    0.602
ABC1499
Phosphomannomutase.
       0.578
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.