STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1510propionyl-CoA carboxylase beta chain. (509 aa)    
Predicted Functional Partners:
ABC1507
Biotin carboxylase.
 
 0.976
accC
acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 0.907
ABC1508
Biotin carboxyl carrier protein.
 
 0.902
ABC1509
enoyl-CoA hydratase.
 
 
 0.889
ABC1506
butyryl-CoA dehydrogenase.
 
 
 0.887
ABC1716
Major facilitator (MFS) superfamily protein.
  
 0.875
ABC0547
hydroxymethylglutaryl-CoA lyase.
 
 
 0.833
birA
Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 0.794
mmgE
2-methylcitrate dehydratase.
  
    0.687
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.676
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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