yhaM protein (Bacillus clausii) - STRING interaction network

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Score

yhaM

CMP-binding protein; Shows a 3'-5' exoribonuclease activity. (319 aa)

Predicted Functional Partners:

ABC1526

0.784

rnr

0.648

pnpA

0.626

rph

0.626

rny

0.625

rnhB

0.621

cssS

0.609

cssR

0.607

mrnC

0.484

recU

0.484

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC1526	cssR	ABC1526	ABC1523	Hypothetical protein.	Two-component response regulator.	0.570
ABC1526	cssS	ABC1526	ABC1524	Hypothetical protein.	Two-component sensor histidine kinase.	0.572
ABC1526	yhaM	ABC1526	ABC1525	Hypothetical protein.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.784
cssR	ABC1526	ABC1523	ABC1526	Two-component response regulator.	Hypothetical protein.	0.570
cssR	cssS	ABC1523	ABC1524	Two-component response regulator.	Two-component sensor histidine kinase.	0.999
cssR	yhaM	ABC1523	ABC1525	Two-component response regulator.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.607
cssS	ABC1526	ABC1524	ABC1526	Two-component sensor histidine kinase.	Hypothetical protein.	0.572
cssS	cssR	ABC1524	ABC1523	Two-component sensor histidine kinase.	Two-component response regulator.	0.999
cssS	yhaM	ABC1524	ABC1525	Two-component sensor histidine kinase.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.609
mrnC	pnpA	ABC0130	ABC2222	Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	0.687
mrnC	rnhB	ABC0130	ABC2284	Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.463
mrnC	rny	ABC0130	ABC2194	Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	HAD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	0.471
mrnC	yhaM	ABC0130	ABC1525	Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.484
pnpA	mrnC	ABC2222	ABC0130	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Conserved hypothetical protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.	0.687
pnpA	rnhB	ABC2222	ABC2284	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.498
pnpA	rnr	ABC2222	ABC3004	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.724
pnpA	rny	ABC2222	ABC2194	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	HAD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.	0.839
pnpA	rph	ABC2222	ABC2652	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.503
pnpA	yhaM	ABC2222	ABC1525	Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.626
recU	yhaM	ABC2054	ABC1525	Recombination protein U; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.	CMP-binding protein; Shows a 3'-5' exoribonuclease activity.	0.484