STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecsAMultidrug ABC transporter ATP-binding protein. (245 aa)    
Predicted Functional Partners:
ecsB
Multidrug ABC transporter permease.
 
  
 0.951
ABC3186
Multidrug ABC transporter permease.
 
  
 0.887
ABC1535
Conserved hypothetical protein.
  
 
 0.793
ABC3993
Antimicrobial peptide ABC transporter ATP-binding protein.
 
  
 0.737
ABC0707
Antimicrobial peptide ABC transporter ATP-binding protein.
    
0.649
ABC1532
Hit family cell-cycle regulation histidine triad.
       0.571
ABC1459
Bacteriocin transport permease.
 
 
 0.485
ABC2732
Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.
  
   0.455
ssuB
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein.
 
    
0.449
cysS
cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
   
 0.446
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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