STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1561Hypothetical protein. (154 aa)    
Predicted Functional Partners:
ABC1560
Conserved hypothetical protein.
 
     0.762
ABC2624
Conserved hypothetical protein.
  
     0.691
spoIIIAF
Stage III sporulation protein AF.
  
     0.639
gerM
Germination protein GerM.
  
     0.635
ABC2626
Stage VI sporulation protein D.
  
     0.608
ABC1675
Stage IV sporulation protein.
  
     0.598
ABC1562
Conserved hypothetical protein.
 
     0.595
ABC1707
Conserved hypothetical protein.
  
     0.579
gerD
Spore germination protein.
  
     0.550
ABC2497
Conserved hypothetical protein.
  
     0.547
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.