STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVBStage V sporulation protein B. (516 aa)    
Predicted Functional Partners:
ABC2376
Conserved hypothetical protein.
  
  
 0.866
cotE
Spore coat protein E.
  
  
 0.810
ABC0096
Conserved hypothetical protein.
 
  
 0.796
spoVR
Stage V sporulation protein R.
   
  
 0.792
spoIIE
Serine phosphatase stage II sporulation protein E.
  
  
 0.760
ABC1675
Stage IV sporulation protein.
 
   
 0.758
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
   
 0.742
cwlD
Germination-specific N-acetylmuramoyl-L-alanine amidase.
  
   
 0.734
ABC0097
Conserved hypothetical protein.
 
  
 0.719
ABC1674
Conserved hypothetical protein.
  
   
 0.717
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.