Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1579Conserved hypothetical protein. (101 aa)    
Predicted Functional Partners:
ABC2684
Conserved hypothetical protein.
  
     0.683
ABC2886
Conserved hypothetical protein.
  
     0.621
ABC2447
Conserved hypothetical protein.
  
     0.619
ABC0211
GNAT family acetyltransferase.
  
     0.618
ABC2421
Lipoprotein.
  
     0.611
ABC1600
Hypothetical protein.
  
     0.582
ABC2561
Conserved hypothetical protein.
  
     0.563
ABC2529
Conserved hypothetical protein.
  
     0.556
ABC3906
Conserved hypothetical protein.
  
     0.548
ABC3838
Conserved hypothetical protein.
  
     0.545
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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