ABC1612 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC1612

NTP pyrophosphohydrolases including oxidative damage repair enzymes. (204 aa)

Predicted Functional Partners:

nnrE

0.873

birA

0.709

rnr

0.547

ABC1613

0.527

dapF

0.483

ABC1697

0.462

deaD

0.462

ABC2911

0.462

ABC3943

0.462

ABC1763

0.450

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC1612	ABC1613	ABC1612	ABC1613	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Lipoate-protein ligase.	0.527
ABC1612	ABC1697	ABC1612	ABC1697	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	ATP-dependent RNA helicase.	0.462
ABC1612	ABC1763	ABC1612	ABC1763	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Aspartokinase; Belongs to the aspartokinase family.	0.450
ABC1612	ABC2911	ABC1612	ABC2911	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	ATP-dependent RNA helicase.	0.462
ABC1612	ABC3943	ABC1612	ABC3943	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.462
ABC1612	birA	ABC1612	ABC2068	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.709
ABC1612	dapF	ABC1612	ABC2934	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.	0.483
ABC1612	deaD	ABC1612	ABC2200	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.	0.462
ABC1612	nnrE	ABC1612	ABC0292	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]	0.873
ABC1612	rnr	ABC1612	ABC3004	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.547
ABC1613	ABC1612	ABC1613	ABC1612	Lipoate-protein ligase.	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	0.527
ABC1613	birA	ABC1613	ABC2068	Lipoate-protein ligase.	Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.410
ABC1697	ABC1612	ABC1697	ABC1612	ATP-dependent RNA helicase.	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	0.462
ABC1697	nnrE	ABC1697	ABC0292	ATP-dependent RNA helicase.	Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]	0.747
ABC1697	rnr	ABC1697	ABC3004	ATP-dependent RNA helicase.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.636
ABC1763	ABC1612	ABC1763	ABC1612	Aspartokinase; Belongs to the aspartokinase family.	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	0.450
ABC1763	birA	ABC1763	ABC2068	Aspartokinase; Belongs to the aspartokinase family.	Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.	0.417
ABC2911	ABC1612	ABC2911	ABC1612	ATP-dependent RNA helicase.	NTP pyrophosphohydrolases including oxidative damage repair enzymes.	0.462
ABC2911	nnrE	ABC2911	ABC0292	ATP-dependent RNA helicase.	Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]	0.747
ABC2911	rnr	ABC2911	ABC3004	ATP-dependent RNA helicase.	Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.	0.487