comEC protein (Bacillus clausii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

comEC

Late competence protein ComEC. (768 aa)

Predicted Functional Partners:

comEA

0.933

comGA

0.905

comEB

0.895

comFA

0.892

comFC

0.848

ABC2279

0.830

comGB

0.800

recA

0.789

comC

0.776

comGC

0.732

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC2279	comC	ABC2279	ABC2619	Smf family DNA processing protein.	Late competence protein ComC.	0.802
ABC2279	comEA	ABC2279	ABC1646	Smf family DNA processing protein.	Late competence protein ComEA.	0.428
ABC2279	comEC	ABC2279	ABC1648	Smf family DNA processing protein.	Late competence protein ComEC.	0.830
ABC2279	comFA	ABC2279	ABC3084	Smf family DNA processing protein.	Late competence protein ComFA.	0.504
ABC2279	comFC	ABC2279	ABC3083	Smf family DNA processing protein.	Late competence protein ComFC.	0.845
ABC2279	comGA	ABC2279	ABC2508	Smf family DNA processing protein.	Late competence protein ComGA.	0.675
ABC2279	comGB	ABC2279	ABC2507	Smf family DNA processing protein.	Late competence protein ComGB.	0.518
ABC2279	comGC	ABC2279	ABC2505	Smf family DNA processing protein.	Late competence protein ComGC; Required for transformation and DNA binding.	0.425
ABC2279	recA	ABC2279	ABC2199	Smf family DNA processing protein.	Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.	0.631
comC	ABC2279	ABC2619	ABC2279	Late competence protein ComC.	Smf family DNA processing protein.	0.802
comC	comEA	ABC2619	ABC1646	Late competence protein ComC.	Late competence protein ComEA.	0.707
comC	comEC	ABC2619	ABC1648	Late competence protein ComC.	Late competence protein ComEC.	0.776
comC	comFA	ABC2619	ABC3084	Late competence protein ComC.	Late competence protein ComFA.	0.533
comC	comFC	ABC2619	ABC3083	Late competence protein ComC.	Late competence protein ComFC.	0.457
comC	comGA	ABC2619	ABC2508	Late competence protein ComC.	Late competence protein ComGA.	0.898
comC	comGB	ABC2619	ABC2507	Late competence protein ComC.	Late competence protein ComGB.	0.911
comC	comGC	ABC2619	ABC2505	Late competence protein ComC.	Late competence protein ComGC; Required for transformation and DNA binding.	0.879
comEA	ABC2279	ABC1646	ABC2279	Late competence protein ComEA.	Smf family DNA processing protein.	0.428
comEA	comC	ABC1646	ABC2619	Late competence protein ComEA.	Late competence protein ComC.	0.707
comEA	comEB	ABC1646	ABC1647	Late competence protein ComEA.	Late competence protein ComEB.	0.745