Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1696Conserved hypothetical protein. (215 aa)    
Predicted Functional Partners:
ABC2384
Conserved hypothetical protein.
  
    0.775
ABC2383
Conserved hypothetical protein.
  
    0.772
ABC2943
Conserved hypothetical protein.
  
    0.772
ABC1291
Conserved hypothetical protein.
  
     0.770
ABC2726
Conserved hypothetical protein.
  
     0.770
ABC2536
Conserved hypothetical protein; Belongs to the UPF0736 family.
  
     0.767
ABC2484
Conserved hypothetical protein.
  
     0.766
ABC1716
Major facilitator (MFS) superfamily protein.
  
     0.762
ABC0097
Conserved hypothetical protein.
  
     0.755
spoIIIAF
Stage III sporulation protein AF.
  
     0.754
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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