Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ABC17412'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family. (171 aa)    
Predicted Functional Partners:
ABC1742
Esterase.
 
  
 0.954
ABC1740
GNAT family acetyltransferase.
  
    0.884
ABC0230
Conserved hypothetical protein.
  
     0.756
ABC2938
Conserved hypothetical protein.
  
     0.739
ABC2103
Conserved hypothetical protein.
  
     0.721
ABC4008
Conserved hypothetical protein.
  
     0.714
ABC2387
Conserved hypothetical protein.
  
     0.705
ABC2500
Conserved hypothetical protein.
  
     0.695
ABC2369
Conserved hypothetical protein.
 
   
 0.693
ABC2923
Conserved hypothetical protein.
  
     0.693
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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