ABC1742 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC1742

Esterase. (243 aa)

Predicted Functional Partners:

ABC1741

0.954

ABC1740

0.696

ABC1743

0.687

ABC2686

0.674

ABC2685

0.615

ABC2046

0.590

ABC2112

0.589

ABC1921

0.560

ABC2379

0.491

bdbC

0.453

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC1740	ABC1741	ABC1740	ABC1741	GNAT family acetyltransferase.	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	0.884
ABC1740	ABC1742	ABC1740	ABC1742	GNAT family acetyltransferase.	Esterase.	0.696
ABC1740	ABC1743	ABC1740	ABC1743	GNAT family acetyltransferase.	Conserved hypothetical protein.	0.447
ABC1741	ABC1740	ABC1741	ABC1740	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	GNAT family acetyltransferase.	0.884
ABC1741	ABC1742	ABC1741	ABC1742	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	Esterase.	0.954
ABC1741	ABC1743	ABC1741	ABC1743	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	Conserved hypothetical protein.	0.559
ABC1741	ABC1921	ABC1741	ABC1921	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	GNAT family acetyltransferase.	0.687
ABC1741	ABC2379	ABC1741	ABC2379	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	Conserved hypothetical protein.	0.498
ABC1741	bdbC	ABC1741	ABC3945	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	Disulfide formation protein; Required for disulfide bond formation in some proteins. Belongs to the DsbB family. BdbC subfamily.	0.467
ABC1742	ABC1740	ABC1742	ABC1740	Esterase.	GNAT family acetyltransferase.	0.696
ABC1742	ABC1741	ABC1742	ABC1741	Esterase.	2'-5' RNA ligase; Belongs to the 2H phosphoesterase superfamily. YjcG family.	0.954
ABC1742	ABC1743	ABC1742	ABC1743	Esterase.	Conserved hypothetical protein.	0.687
ABC1742	ABC1921	ABC1742	ABC1921	Esterase.	GNAT family acetyltransferase.	0.560
ABC1742	ABC2046	ABC1742	ABC2046	Esterase.	Thioredoxin.	0.590
ABC1742	ABC2112	ABC1742	ABC2112	Esterase.	Conserved hypothetical protein.	0.589
ABC1742	ABC2379	ABC1742	ABC2379	Esterase.	Conserved hypothetical protein.	0.491
ABC1742	ABC2685	ABC1742	ABC2685	Esterase.	Sodium:proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.615
ABC1742	ABC2686	ABC1742	ABC2686	Esterase.	Conserved hypothetical protein.	0.674
ABC1742	bdbC	ABC1742	ABC3945	Esterase.	Disulfide formation protein; Required for disulfide bond formation in some proteins. Belongs to the DsbB family. BdbC subfamily.	0.453
ABC1743	ABC1740	ABC1743	ABC1740	Conserved hypothetical protein.	GNAT family acetyltransferase.	0.447