Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1749Two-component sensor histidine kinase. (321 aa)    
Predicted Functional Partners:
ABC4010
Two-component response regulator.
 
   0.847
ABC3553
Two-component response regulator.
 
   0.844
ABC1169
Two-component response regulator.
 
   0.842
phoP
Two-component response regulator of alkaline phosphatase synthesis.
 
   0.842
ABC3641
Two-component response regulator.
 
   0.842
resD
Two-component response regulator.
 
   0.839
ABC0390
Two-component response regulator.
 
   0.838
ABC1859
Two-component response regulator.
 
   0.838
ABC4099
Two-component response regulator.
 
   0.834
ABC1177
Two-component response regulator.
 
   0.833
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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