STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnrATranscriptional regulator. (100 aa)    
Predicted Functional Partners:
glnA
Glutamine synthetase.
 
 
 0.969
ABC3940
Glutamine synthetase.
 
 
 0.915
nrgA
Ammonium transporter.
  
  
 0.789
ABC1759
Conserved hypothetical protein.
       0.690
ABC1758
Serine protease; Belongs to the peptidase S8 family.
       0.682
codY
GTP-sensing transcriptional pleiotropic repressor; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
      
 0.668
pucR
Transcriptional regulator.
  
   
 0.642
ansZ
L-asparaginase.
  
   
 0.638
braB
Branched-chain amino acid transport system carrier protein BraB; Component of the transport system for branched-chain amino acids.
      
 0.567
ABC1761
Hypothetical protein.
       0.555
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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