ABC1796 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ABC1796

Stage V sporulation protein AC. (157 aa)

Predicted Functional Partners:

ABC1797

0.971

ABC1798

0.963

spoVAF

0.963

ABC1799

0.903

spoVAD

0.897

spoIIAB

0.868

sigF

0.846

ABC1827

0.845

gpr

0.843

spoIVA

0.799

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC1796	ABC1797	ABC1796	ABC1797	Stage V sporulation protein AC.	Stage V sporulation protein AD.	0.971
ABC1796	ABC1798	ABC1796	ABC1798	Stage V sporulation protein AC.	Stage V sporulation protein AE.	0.963
ABC1796	ABC1799	ABC1796	ABC1799	Stage V sporulation protein AC.	Stage V sporulation protein AE.	0.903
ABC1796	ABC1827	ABC1796	ABC1827	Stage V sporulation protein AC.	Stage V sporulation protein AE.	0.845
ABC1796	gpr	ABC1796	ABC1652	Stage V sporulation protein AC.	Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.843
ABC1796	sigF	ABC1796	ABC1795	Stage V sporulation protein AC.	DNA-directed RNA polymerase sigma factor sigma-F; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.846
ABC1796	spoIIAB	ABC1796	ABC1794	Stage V sporulation protein AC.	Stage II sporulation protein AB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.868
ABC1796	spoIVA	ABC1796	ABC1882	Stage V sporulation protein AC.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.799
ABC1796	spoVAD	ABC1796	ABC1826	Stage V sporulation protein AC.	Stage V sporulation protein AD.	0.897
ABC1796	spoVAF	ABC1796	ABC1800	Stage V sporulation protein AC.	Stage V sporulation protein AF.	0.963
ABC1797	ABC1796	ABC1797	ABC1796	Stage V sporulation protein AD.	Stage V sporulation protein AC.	0.971
ABC1797	ABC1798	ABC1797	ABC1798	Stage V sporulation protein AD.	Stage V sporulation protein AE.	0.967
ABC1797	ABC1799	ABC1797	ABC1799	Stage V sporulation protein AD.	Stage V sporulation protein AE.	0.928
ABC1797	ABC1827	ABC1797	ABC1827	Stage V sporulation protein AD.	Stage V sporulation protein AE.	0.910
ABC1797	gpr	ABC1797	ABC1652	Stage V sporulation protein AD.	Germination protease precursor; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.	0.886
ABC1797	sigF	ABC1797	ABC1795	Stage V sporulation protein AD.	DNA-directed RNA polymerase sigma factor sigma-F; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.	0.846
ABC1797	spoIIAB	ABC1797	ABC1794	Stage V sporulation protein AD.	Stage II sporulation protein AB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.	0.863
ABC1797	spoIVA	ABC1797	ABC1882	Stage V sporulation protein AD.	Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.	0.798
ABC1797	spoVAF	ABC1797	ABC1800	Stage V sporulation protein AD.	Stage V sporulation protein AF.	0.972
ABC1798	ABC1796	ABC1798	ABC1796	Stage V sporulation protein AE.	Stage V sporulation protein AC.	0.963