Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC1799Stage V sporulation protein AE. (195 aa)    
Predicted Functional Partners:
spoVAF
Stage V sporulation protein AF.
  
  
 0.951
ABC1797
Stage V sporulation protein AD.
  
  
 0.928
ABC1796
Stage V sporulation protein AC.
  
  
 0.903
spoVAC
Stage V sporulation protein AC.
 
  
 0.879
ABC1798
Stage V sporulation protein AE.
  
  
 0.875
ABC1827
Stage V sporulation protein AE.
  
  
 0.775
spoVAD
Stage V sporulation protein AD.
 
  
 0.734
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
       0.686
ABC2745
Conserved hypothetical protein.
 
     0.672
spoIIAA
Stage II sporulation protein AA, anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family.
       0.601
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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