STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1823Conserved hypothetical protein. (228 aa)    
Predicted Functional Partners:
spoVAD
Stage V sporulation protein AD.
 
  
 0.734
ABC1827
Stage V sporulation protein AE.
 
  
 0.723
spoVAC
Stage V sporulation protein AC.
 
  
 0.722
ABC2953
Conserved hypothetical protein.
  
     0.627
ABC1824
Conserved hypothetical protein.
       0.550
ABC2003
Sopre germination protein.
 
  
 0.517
gerAA
Sopre germination protein.
 
  
 0.515
ABC2744
Conserved hypothetical protein.
  
     0.506
ABC1822
Conserved hypothetical protein.
       0.477
spoIVB
Stage IV sporulation protein B.
  
     0.473
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.