STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1839Conserved hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family. (183 aa)    
Predicted Functional Partners:
ABC2982
Conserved hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
  
  
 
0.908
ABC1838
Ferric ion ABC transporter permease.
  
    0.789
ABC1837
Ferric ion ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
     
 0.715
resE
Two-component sensor histidine kinase.
       0.602
ABC1752
Lactoylglutathione lyase.
  
   
 0.565
ABC1840
Hypothetical protein.
       0.512
ABC1869
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
   
 0.489
resD
Two-component response regulator.
       0.416
ABC1319
Bacterioferritin comigratory protein BCP.
       0.411
ABC1320
Conserved hypothetical protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.411
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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