Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ferFerredoxin. (83 aa)    
Predicted Functional Partners:
ABC1845
Conserved hypothetical protein.
 
     0.760
ABC1847
Protease.
       0.696
ABC2381
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.696
ABC2189
Conserved hypothetical protein; Belongs to the UPF0342 family.
  
     0.694
ABC2925
Thioredoxin reductase.
     
 0.646
ABC1910
Conserved hypothetical protein.
  
     0.610
recS
ATP-dependent DNA helicase RecS.
       0.597
ABC2396
Conserved hypothetical protein; Belongs to the UPF0358 family.
  
     0.593
ABC1308
Conserved hypothetical protein.
  
     0.574
ABC1466
Conserved hypothetical protein.
 
   
 0.561
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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