STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1851Repressor protein. (88 aa)    
Predicted Functional Partners:
opuAA
Glycine betaine ABC transporter ATP-binding protein.
     
 0.568
treA
Trehalose-6-phosphate hydrolase.
      
 0.567
ABC1850
Transcriptional regulator.
     
 0.546
gbsB
Alcohol dehydrogenase.
   
  
 0.534
glmS
Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
     
 0.529
opuAB
Glycine betaine ABC transporter permease.
      
 0.523
gbsA
Betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
      
 0.459
csrA
Carbon storage regulator CrsA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
      
 0.457
ispA-2
Intracellular alkaline protease; Belongs to the peptidase S8 family.
      
 0.452
vpr
Minor extracellular serine protease; Belongs to the peptidase S8 family.
      
 0.452
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.