STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1885Heptaprenyl diphosphate synthase component I. (248 aa)    
Predicted Functional Partners:
hepA
Heptaprenyl diphosphate synthase component II; Belongs to the FPP/GGPP synthase family.
 
 
 0.981
menG
Menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2).
 
  
 0.920
ispA
Geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.919
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.908
ABC2384
Conserved hypothetical protein.
  
    0.728
ABC1709
Conserved hypothetical protein.
  
     0.723
ABC1887
4-hydroxybenzoate octaprenyltransferase; Belongs to the UbiA prenyltransferase family.
     
 0.717
ABC1291
Conserved hypothetical protein.
  
     0.709
ABC1526
Hypothetical protein.
  
     0.708
bofA
Inhibition of the pro-sigma-K processing machinery.
  
     0.703
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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