STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1912Zn-dependent protease. (232 aa)    
Predicted Functional Partners:
ABC1911
Conserved hypothetical protein.
       0.678
ABC1910
Conserved hypothetical protein.
       0.620
qcrC
Menaquinol-cytochrome c reductase cytochrome b/c subunit; Component of the menaquinol-cytochrome c reductase complex.
       0.576
qcrB
Menaquinol-cytochrome c reductase cytochrome b subunit.
       0.553
qcrA
Menaquinol-cytochrome c reductase iron-sulfur subunit.
       0.548
ABC1905
Conserved hypothetical protein; Belongs to the UPF0302 family.
  
    0.519
birA
Bifunctional biotin biosynthesis protein BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.514
ABC1906
Conserved hypothetical protein.
       0.511
ABC1904
Conserved hypothetical protein.
  
    0.502
ABC2317
RNA-binding protein Sun; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
       0.475
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.