STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC19363-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family. (200 aa)    
Predicted Functional Partners:
ABC1937
Lysine decarboxylase; Belongs to the LOG family.
       0.685
ABC1933
Conserved hypothetical protein.
       0.664
ABC1934
Cobalt ABC transporter ATP-binding protein.
       0.664
ABC1935
Cobalt ABC transporter permease.
       0.664
gltA
Glutamate synthase large subunit.
     
 0.516
adaA
methylphosphotriester-DNA alkyltransferase.
  
  
 0.512
adaB
methylated-DNA-[protein]-cysteine S-methyltransferase.
     
 0.496
ABC2676
DNA-directed DNA polymerase beta chain.
 
   
 0.470
pheT
phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.413
exoA
Exodeoxyribonuclease III.
    
 0.412
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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