STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1939Acetyltransferase. (401 aa)    
Predicted Functional Partners:
ABC3446
Hypothetical protein.
  
     0.730
ABC0986
Hypothetical protein.
  
     0.687
ABC1940
TetR/AcrR family transcriptional regulator.
       0.671
hemN
Oxygen-independent coproporphyrinogen oxidase III; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
     0.531
ABC3664
Outer surface protein.
 
    0.531
ABC1941
Conserved hypothetical protein.
       0.468
ABC3376
Conserved hypothetical protein.
  
     0.443
ABC3057
Conserved hypothetical protein.
  
     0.440
ABC1373
Phage-related protein.
  
     0.416
ABC1728
Conserved hypothetical protein.
  
     0.411
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.