STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1949AMP-(fatty)acid ligase. (412 aa)    
Predicted Functional Partners:
ABC1952
Conserved hypothetical protein.
 
 
  0.988
ABC1951
Conserved hypothetical protein.
  
 0.987
ABC1948
Siderophore biosynthesis protein.
  
 0.972
ABC1950
Hypothetical protein.
  
 
 0.878
ABC1947
Siderophore biosynthesis protein.
 
   
 0.837
ABC0343
medium-chain-fatty-acid--CoA ligase.
  
     0.713
ABC2990
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.696
ABC3255
Acetyl-coenzyme A synthetase.
 
 
0.625
acsA
Acetyl-coenzyme A synthetase.
 
 
0.611
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
    
 
 0.610
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.