STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1969Hypothetical protein. (67 aa)    
Predicted Functional Partners:
ABC1971
Conserved hypothetical protein.
 
    0.966
ABC1970
Multidrug ABC transporter ATP-binding protein.
 
    0.935
sigY
DNA-directed RNA polymerase ECF-type sigma factor sigma-Y; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.716
ABC2684
Conserved hypothetical protein.
  
     0.648
ABC0203
Conserved hypothetical protein.
  
     0.625
ABC0211
GNAT family acetyltransferase.
  
     0.617
ABC0333
Conserved hypothetical protein.
  
     0.592
ABC1973
Conserved hypothetical protein.
       0.592
ABC3490
Conserved hypothetical protein.
  
     0.575
ABC3838
Conserved hypothetical protein.
  
     0.557
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.