STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC1971Conserved hypothetical protein. (259 aa)    
Predicted Functional Partners:
ABC1969
Hypothetical protein.
 
    0.980
ABC1970
Multidrug ABC transporter ATP-binding protein.
 
   0.978
sigY
DNA-directed RNA polymerase ECF-type sigma factor sigma-Y; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.752
ABC1973
Conserved hypothetical protein.
       0.592
ABC3562
Conserved hypothetical protein.
 
     0.560
ABC2529
Conserved hypothetical protein.
  
     0.558
ABC0903
Conserved hypothetical protein.
 
     0.554
ABC1728
Conserved hypothetical protein.
  
     0.540
ABC2421
Lipoprotein.
  
     0.503
ABC1434
Multidrug ABC transporter ATP-binding protein.
 
   0.494
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.