ABC1986 protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABC1986

General stress protein GSP160. (174 aa)

Predicted Functional Partners:

rpoB

0.726

rpoC

0.718

ABC1119

0.531

ABC4020

0.531

rplU

0.480

gltA

0.475

guaA

0.466

rpoZ

0.466

rpoA

0.452

ABC1987

0.451

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC1119	ABC1986	ABC1119	ABC1986	Conserved hypothetical protein.	General stress protein GSP160.	0.531
ABC1986	ABC1119	ABC1986	ABC1119	General stress protein GSP160.	Conserved hypothetical protein.	0.531
ABC1986	ABC1987	ABC1986	ABC1987	General stress protein GSP160.	Conserved hypothetical protein.	0.451
ABC1986	ABC4020	ABC1986	ABC4020	General stress protein GSP160.	G3E family GTPase.	0.531
ABC1986	gltA	ABC1986	ABC2035	General stress protein GSP160.	Glutamate synthase large subunit.	0.475
ABC1986	guaA	ABC1986	ABC0936	General stress protein GSP160.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.466
ABC1986	rplU	ABC1986	ABC2602	General stress protein GSP160.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.480
ABC1986	rpoA	ABC1986	ABC0177	General stress protein GSP160.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.452
ABC1986	rpoB	ABC1986	ABC0142	General stress protein GSP160.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.726
ABC1986	rpoC	ABC1986	ABC0143	General stress protein GSP160.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.718
ABC1986	rpoZ	ABC1986	ABC2321	General stress protein GSP160.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.466
ABC1987	ABC1986	ABC1987	ABC1986	Conserved hypothetical protein.	General stress protein GSP160.	0.451
ABC4020	ABC1986	ABC4020	ABC1986	G3E family GTPase.	General stress protein GSP160.	0.531
gltA	ABC1986	ABC2035	ABC1986	Glutamate synthase large subunit.	General stress protein GSP160.	0.475
gltA	guaA	ABC2035	ABC0936	Glutamate synthase large subunit.	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	0.834
gltA	rpoA	ABC2035	ABC0177	Glutamate synthase large subunit.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.440
gltA	rpoB	ABC2035	ABC0142	Glutamate synthase large subunit.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.726
gltA	rpoC	ABC2035	ABC0143	Glutamate synthase large subunit.	DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.688
guaA	ABC1986	ABC0936	ABC1986	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	General stress protein GSP160.	0.466
guaA	gltA	ABC0936	ABC2035	GMP synthetase; Catalyzes the synthesis of GMP from XMP.	Glutamate synthase large subunit.	0.834