Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2003Sopre germination protein. (506 aa)    
Predicted Functional Partners:
ABC2005
Spore germination protein.
 
  
 0.925
ABC2004
Spore germination protein.
 
  
 0.923
gerKC
Spore germination protein KC.
 
  
 0.792
spoVAD
Stage V sporulation protein AD.
  
  
 0.789
ABC1797
Stage V sporulation protein AD.
  
  
 0.788
ABC1827
Stage V sporulation protein AE.
  
  
 0.785
spoVAC
Stage V sporulation protein AC.
  
  
 0.784
gerKB
Spore germination protein KB.
 
  
 0.782
ABC1798
Stage V sporulation protein AE.
  
  
 0.779
ABC1796
Stage V sporulation protein AC.
  
    0.777
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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