STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2039Conserved hypothetical protein. (489 aa)    
Predicted Functional Partners:
ABC2040
Conserved hypothetical protein.
 
  
 0.989
ABC3673
Conserved hypothetical protein.
 
  
 0.921
ABC2041
Conserved hypothetical protein.
       0.675
ABC2042
Conserved hypothetical protein.
       0.654
sppA
Signal peptidase SppA.
 
    0.566
ABC2043
Diadenosine tetraphosphatase.
       0.495
ABC2900
Conserved hypothetical protein.
  
     0.482
ABC2746
Conserved hypothetical protein.
 
    0.458
ABC2399
Conserved hypothetical protein.
  
     0.455
ABC3364
Pyrophosphatase.
  
     0.401
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.