Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2040Conserved hypothetical protein. (160 aa)    
Predicted Functional Partners:
ABC2039
Conserved hypothetical protein.
 
  
 0.989
ABC3674
Conserved hypothetical protein.
 
  
 0.950
ABC2041
Conserved hypothetical protein.
       0.749
ABC2042
Conserved hypothetical protein.
       0.734
ABC2043
Diadenosine tetraphosphatase.
       0.629
sppA
Signal peptidase SppA.
 
    0.612
ABC0519
Cell-division protein.
  
    0.571
ABC2399
Conserved hypothetical protein.
  
     0.491
ABC0025
Conserved hypothetical protein.
  
  
 0.445
ABC0196
Conserved hypothetical protein.
  
  
 0.445
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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