Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2090Conserved hypothetical protein. (184 aa)    
Predicted Functional Partners:
ABC0480
Conserved hypothetical protein.
  
  
 0.672
ABC3794
Transposase.
  
     0.523
ABC2592
Conserved hypothetical protein.
  
   
 0.512
ABC1200
Conserved hypothetical protein.
      
 0.485
ABC2834
Structural protein.
  
     0.443
ABC0066
Conserved hypothetical protein.
  
     0.422
ABC0479
Hypothetical protein.
  
     0.422
ABC0730
Conserved hypothetical protein.
  
     0.414
ABC0941
Conserved hypothetical protein.
 
     0.410
ABC1009
Conserved hypothetical protein.
  
     0.400
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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