STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2119DNA topoisomerase IA TopB. (715 aa)    
Predicted Functional Partners:
ABC2118
Conserved hypothetical protein.
       0.785
recS
ATP-dependent DNA helicase RecS.
 
 0.783
ABC2109
ATP-dependent DNA helicase RecS.
 
 0.768
gltA
Glutamate synthase large subunit.
  
  
 0.652
dinG
ATP-dependent DNA helicase DinG; 3'-5' exonuclease.
  
 0.611
ABC2105
5'-3' exonuclease.
  
 0.576
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.576
ABC2120
Hypothetical protein.
       0.539
ABC2848
Single-strand DNA-binding protein.
  
 
 0.529
ssb
Single-strand DNA-binding protein SSB; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.529
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.