Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2123Multidrug ABC transporter permease. (228 aa)    
Predicted Functional Partners:
ABC2121
Multidrug ABC transporter ATP-binding protein.
 
     0.903
ABC2122
Multidrug ABC transporter permease.
  
    0.843
ABC2124
Two-component sensor histidine kinase.
 
     0.816
ABC2125
Two-component response regulator.
 
     0.767
ABC2531
Conserved hypothetical protein.
 
     0.584
ABC1195
Hypothetical protein.
  
     0.578
ABC0637
Hypothetical protein.
  
     0.541
ABC2120
Hypothetical protein.
       0.533
ABC2211
Conserved hypothetical protein.
  
     0.469
ABC2119
DNA topoisomerase IA TopB.
 
     0.464
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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