STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2138Conserved hypothetical protein. (83 aa)    
Predicted Functional Partners:
ABC0010
Conserved hypothetical protein.
  
     0.722
ABC0366
Conserved hypothetical protein.
  
     0.709
ABC2053
Conserved hypothetical protein.
  
     0.693
ABC2949
Conserved hypothetical protein.
  
     0.643
ABC1312
Conserved hypothetical protein.
  
     0.639
ABC1716
Major facilitator (MFS) superfamily protein.
  
     0.609
qoxD
Cytochrome aa3 quinol oxidase subunit IV QoxD.
 
     0.530
ABC0097
Conserved hypothetical protein.
  
     0.529
ABC2004
Spore germination protein.
  
     0.528
ABC3836
Spore germination protein.
  
     0.522
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.