Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ABC2143Dipeptidase. (307 aa)    
Predicted Functional Partners:
ABC2594
Glutamine amidotransferase.
     0.794
ABC2144
Molecular chaperone; Belongs to the small heat shock protein (HSP20) family.
     
 0.676
ABC2145
Hypothetical protein.
       0.624
ABC3644
Glutamine amidotransferase.
     0.615
cheV
Chemotaxis protein CheV.
       0.573
ABC2666
Conserved hypothetical protein.
  
  
 0.516
spoVS
Stage V sporulation protein S.
 
     0.477
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
       0.475
miaB
2-methylthioadenine synthetase; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
       0.411
ABC2193
Conserved hypothetical protein.
       0.411
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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