Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2147Conserved hypothetical protein. (448 aa)    
Predicted Functional Partners:
ABC2148
Alpha/beta superfamily hydrolase.
  
    0.822
cheV
Chemotaxis protein CheV.
 
  
 0.770
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.710
ABC2146
Conserved hypothetical protein.
       0.635
ABC2166
Site-specific recombinase.
  
     0.608
ABC0044
Two-component sensor histidine kinase.
  
  
 0.579
fliL
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
    0.558
ABC2886
Conserved hypothetical protein.
  
     0.514
ABC1526
Hypothetical protein.
  
     0.484
spo0B
Stage 0 sporulation protein B.
  
     0.484
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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