spoVK protein (Bacillus clausii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

spoVK

Spore formation protein K. (313 aa)

Predicted Functional Partners:

acuC

0.731

spoIIID

0.600

htpG

0.591

spoIIP

0.585

spoIID

0.579

spoIIGA

0.574

spoIIR

0.574

spoVR

0.568

bofA

0.558

ABC2180

0.556

Your Current Organism:

Bacillus clausii

NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABC2180	spoVK	ABC2180	ABC2181	Aluminum resistance protein.	Spore formation protein K.	0.556
acuC	htpG	ABC2763	ABC0970	Acetoin utilization protein AcuC.	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	0.924
acuC	spoVK	ABC2763	ABC2181	Acetoin utilization protein AcuC.	Spore formation protein K.	0.731
bofA	spoIID	ABC0041	ABC3846	Inhibition of the pro-sigma-K processing machinery.	Stage II sporulation protein D.	0.611
bofA	spoIIGA	ABC0041	ABC2352	Inhibition of the pro-sigma-K processing machinery.	Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.	0.627
bofA	spoIIID	ABC0041	ABC3842	Inhibition of the pro-sigma-K processing machinery.	Stage III sporulation protein D.	0.566
bofA	spoIIP	ABC0041	ABC1653	Inhibition of the pro-sigma-K processing machinery.	Stage II sporulation protein P; Septal wall dissolution protein.	0.824
bofA	spoIIR	ABC0041	ABC3872	Inhibition of the pro-sigma-K processing machinery.	Stage II sporulation protein R.	0.630
bofA	spoVK	ABC0041	ABC2181	Inhibition of the pro-sigma-K processing machinery.	Spore formation protein K.	0.558
bofA	spoVR	ABC0041	ABC1500	Inhibition of the pro-sigma-K processing machinery.	Stage V sporulation protein R.	0.644
htpG	acuC	ABC0970	ABC2763	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	Acetoin utilization protein AcuC.	0.924
htpG	spoVK	ABC0970	ABC2181	Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.	Spore formation protein K.	0.591
spoIID	bofA	ABC3846	ABC0041	Stage II sporulation protein D.	Inhibition of the pro-sigma-K processing machinery.	0.611
spoIID	spoIIGA	ABC3846	ABC2352	Stage II sporulation protein D.	Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.	0.723
spoIID	spoIIID	ABC3846	ABC3842	Stage II sporulation protein D.	Stage III sporulation protein D.	0.802
spoIID	spoIIP	ABC3846	ABC1653	Stage II sporulation protein D.	Stage II sporulation protein P; Septal wall dissolution protein.	0.922
spoIID	spoIIR	ABC3846	ABC3872	Stage II sporulation protein D.	Stage II sporulation protein R.	0.818
spoIID	spoVK	ABC3846	ABC2181	Stage II sporulation protein D.	Spore formation protein K.	0.579
spoIID	spoVR	ABC3846	ABC1500	Stage II sporulation protein D.	Stage V sporulation protein R.	0.575
spoIIGA	bofA	ABC2352	ABC0041	Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR.	Inhibition of the pro-sigma-K processing machinery.	0.627