STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2182Phage integrase family site-specific recombinase; Belongs to the 'phage' integrase family. (335 aa)    
Predicted Functional Partners:
comFC
Late competence protein ComFC.
   
    0.570
ABC3455
Conserved hypothetical protein; Belongs to the SOS response-associated peptidase family.
  
    0.536
recJ
Single-strand DNA-specific exonuclease.
 
  
 0.535
spoVK
Spore formation protein K.
       0.519
ABC1325
Phage-related integrase/recombinase; Belongs to the 'phage' integrase family.
  
     0.513
tyrA
Prephenate dehydrogenase.
  
    0.498
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.474
purR
Transcriptional repressor of the purine operon.
   
    0.443
xpt
Xanthine phosphoribosyltransferase; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
    0.443
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.443
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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