STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2196Conserved hypothetical protein. (84 aa)    
Predicted Functional Partners:
ABC2197
Conserved hypothetical protein.
 
   
 0.963
ABC2195
Chromosome segregation ATPase.
 
   
 0.961
ABC2198
DNA repair exonuclease.
 
     0.960
ABC0060
Conserved hypothetical protein.
 
     0.800
ABC0059
Conserved hypothetical protein.
 
     0.790
rny
HAD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
       0.670
recA
Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
       0.646
cinA
Competence/damage-inducible protein CinA; Belongs to the CinA family.
       0.605
ABC2193
Conserved hypothetical protein.
       0.515
spoVS
Stage V sporulation protein S.
       0.407
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.