Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABC0059 | ABC0060 | ABC0059 | ABC0060 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.984 |
ABC0059 | ABC2195 | ABC0059 | ABC2195 | Conserved hypothetical protein. | Chromosome segregation ATPase. | 0.806 |
ABC0059 | ABC2196 | ABC0059 | ABC2196 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.793 |
ABC0059 | ABC2197 | ABC0059 | ABC2197 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.804 |
ABC0059 | ABC2198 | ABC0059 | ABC2198 | Conserved hypothetical protein. | DNA repair exonuclease. | 0.801 |
ABC0060 | ABC0059 | ABC0060 | ABC0059 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.984 |
ABC0060 | ABC2195 | ABC0060 | ABC2195 | Conserved hypothetical protein. | Chromosome segregation ATPase. | 0.801 |
ABC0060 | ABC2196 | ABC0060 | ABC2196 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.795 |
ABC0060 | ABC2197 | ABC0060 | ABC2197 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.800 |
ABC0060 | ABC2198 | ABC0060 | ABC2198 | Conserved hypothetical protein. | DNA repair exonuclease. | 0.805 |
ABC2105 | ABC2195 | ABC2105 | ABC2195 | 5'-3' exonuclease. | Chromosome segregation ATPase. | 0.972 |
ABC2105 | ABC2197 | ABC2105 | ABC2197 | 5'-3' exonuclease. | Conserved hypothetical protein. | 0.972 |
ABC2105 | ABC2198 | ABC2105 | ABC2198 | 5'-3' exonuclease. | DNA repair exonuclease. | 0.992 |
ABC2105 | polA | ABC2105 | ABC2709 | 5'-3' exonuclease. | DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.976 |
ABC2105 | recA | ABC2105 | ABC2199 | 5'-3' exonuclease. | Recombination protein A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.970 |
ABC2105 | topA | ABC2105 | ABC2278 | 5'-3' exonuclease. | DNA topoisomerase IA TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DN [...] | 0.732 |
ABC2105 | topB | ABC2105 | ABC3953 | 5'-3' exonuclease. | DNA topoisomerase IA TopB; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DN [...] | 0.614 |
ABC2195 | ABC0059 | ABC2195 | ABC0059 | Chromosome segregation ATPase. | Conserved hypothetical protein. | 0.806 |
ABC2195 | ABC0060 | ABC2195 | ABC0060 | Chromosome segregation ATPase. | Conserved hypothetical protein. | 0.801 |
ABC2195 | ABC2105 | ABC2195 | ABC2105 | Chromosome segregation ATPase. | 5'-3' exonuclease. | 0.972 |
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