Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ABC2349 | sigE | ABC2349 | ABC2351 | Conserved hypothetical protein. | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.854 |
| ABC2349 | sigG | ABC2349 | ABC2350 | Conserved hypothetical protein. | DNA-directed RNA polymerase sigma factor sigma-G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.894 |
| ABC2349 | spoIIAB | ABC2349 | ABC1794 | Conserved hypothetical protein. | Stage II sporulation protein AB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.755 |
| ABC2349 | spoIIE | ABC2349 | ABC0101 | Conserved hypothetical protein. | Serine phosphatase stage II sporulation protein E. | 0.715 |
| ABC2349 | spoIIGA | ABC2349 | ABC2352 | Conserved hypothetical protein. | Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.832 |
| ABC2349 | spoIIID | ABC2349 | ABC3842 | Conserved hypothetical protein. | Stage III sporulation protein D. | 0.770 |
| ABC2349 | spoIIM | ABC2349 | ABC1779 | Conserved hypothetical protein. | Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane. | 0.474 |
| ABC2349 | spoIIP | ABC2349 | ABC1653 | Conserved hypothetical protein. | Stage II sporulation protein P; Septal wall dissolution protein. | 0.528 |
| ABC2349 | spoIIR | ABC2349 | ABC3872 | Conserved hypothetical protein. | Stage II sporulation protein R. | 0.800 |
| sigE | ABC2349 | ABC2351 | ABC2349 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein. | 0.854 |
| sigE | sigG | ABC2351 | ABC2350 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase sigma factor sigma-G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.635 |
| sigE | spoIIAB | ABC2351 | ABC1794 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein AB; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.773 |
| sigE | spoIIE | ABC2351 | ABC0101 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Serine phosphatase stage II sporulation protein E. | 0.647 |
| sigE | spoIIGA | ABC2351 | ABC2352 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Sporulation sigma-E factor processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.903 |
| sigE | spoIIID | ABC2351 | ABC3842 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage III sporulation protein D. | 0.800 |
| sigE | spoIIP | ABC2351 | ABC1653 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein P; Septal wall dissolution protein. | 0.500 |
| sigE | spoIIR | ABC2351 | ABC3872 | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein R. | 0.796 |
| sigG | ABC2349 | ABC2350 | ABC2349 | DNA-directed RNA polymerase sigma factor sigma-G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Conserved hypothetical protein. | 0.894 |
| sigG | sigE | ABC2350 | ABC2351 | DNA-directed RNA polymerase sigma factor sigma-G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase sigma-29 factor sigma-E; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.635 |
| sigG | spoIIAA | ABC2350 | ABC1793 | DNA-directed RNA polymerase sigma factor sigma-G; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Stage II sporulation protein AA, anti-sigma F factor antagonist; Belongs to the anti-sigma-factor antagonist family. | 0.547 |
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