STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABC2414Oligopeptide ABC transporter substrate-binding protein. (585 aa)    
Predicted Functional Partners:
ABC2413
Oligopeptide ABC transporter permease.
 
 
 0.914
ABC2412
Oligopeptide ABC transporter permease.
 
 
 0.883
ABC3092
Oligopeptide ABC transporter permease.
 
 
 0.820
ABC3091
Oligopeptide ABC transporter permease.
 
 
 0.800
ABC1241
Oligopeptide ABC transporter permease.
 
 
 0.725
ABC1242
Oligopeptide ABC transporter permease.
 
 0.710
ABC4065
Oligopeptide ABC transporter permease.
 
 
 0.697
ABC3660
Oligopeptide ABC transporter permease.
 
 
 0.692
ABC1609
Oligopeptide ABC transporter permease.
 
 
 0.668
ABC0031
Oligopeptide ABC transporter permease.
 
 
 0.663
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.