Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABC2422Conserved hypothetical protein. (71 aa)    
Predicted Functional Partners:
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.660
ABC2421
Lipoprotein.
 
     0.659
ABC2383
Conserved hypothetical protein.
  
     0.644
ABC2536
Conserved hypothetical protein; Belongs to the UPF0736 family.
  
     0.620
ABC1879
Conserved hypothetical protein.
 
    0.601
ABC2053
Conserved hypothetical protein.
  
     0.582
ABC2484
Conserved hypothetical protein.
  
     0.568
ABC0281
Conserved hypothetical protein.
  
     0.553
ABC3858
ATP synthase protein I.
  
     0.553
ABC1716
Major facilitator (MFS) superfamily protein.
  
     0.546
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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