Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABC2448Conserved hypothetical protein; Belongs to the UPF0403 family. (142 aa)    
Predicted Functional Partners:
ABC1863
Thioredoxin reductase.
  
  
 0.903
bshC
Conserved hypothetical protein; Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH.
  
   
 0.821
ABC2108
Conserved hypothetical protein.
  
   
 0.804
ABC2070
Glycosyltransferase.
  
   
 0.799
bkdB
Branched-chain alpha-keto acid dehydrogenase E2 component.
 
     0.717
ABC2071
Conserved hypothetical protein.
  
  
 0.714
bkdA2
Branched-chain alpha-keto acid dehydrogenase E1 component beta chain.
       0.675
bkdA1
Branched-chain alpha-keto acid dehydrogenase E1 component alpha chain.
       0.675
lpd
Branched-chain alpha-keto acid dehydrogenase E3 component.
       0.669
bcd
Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.652
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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