STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIAFStage III sporulation protein AF. (196 aa)    
Predicted Functional Partners:
spoIIIAG
Stage III sporulation protein AG.
 
  
 0.993
spoIIIAE
Stage III sporulation protein AE.
 
  
 0.993
spoIIIAD
Stage III sporulation protein AD.
 
  
 0.988
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.987
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.954
spoIIIAB
Stage III sporulation protein AB.
 
  
 0.939
spoIIIAA
Stage III sporulation protein AA.
 
  
 0.824
gerM
Germination protein GerM.
  
    0.815
ABC1560
Conserved hypothetical protein.
  
    0.814
spoIIP
Stage II sporulation protein P; Septal wall dissolution protein.
  
  
 0.806
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.