Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
spoIIIABStage III sporulation protein AB. (170 aa)    
Predicted Functional Partners:
spoIIIAA
Stage III sporulation protein AA.
 
  
 0.998
spoIIIAC
Stage III sporulation protein AC.
 
  
 0.993
spoIIIAD
Stage III sporulation protein AD.
 
  
 0.991
spoIIIAE
Stage III sporulation protein AE.
 
  
 0.980
spoIIIAG
Stage III sporulation protein AG.
 
  
 0.976
spoIIIAF
Stage III sporulation protein AF.
 
  
 0.939
spoIIM
Stage II sporulation protein M; Required for complete septum migration and engulfment of the forespore compartment during sporulation. Required for stabilizing and recruiting of SpoIIP to the septal membrane.
  
  
 0.930
ABC2479
Conserved hypothetical protein.
 
    0.904
spoIIIAH
Stage III sporulation protein AH.
 
  
 0.889
ABC1674
Conserved hypothetical protein.
  
  
 0.861
Your Current Organism:
Bacillus clausii
NCBI taxonomy Id: 66692
Other names: B. clausii KSM-K16, Bacillus clausii KSM-K16, Bacillus sp. (strain KSM-K16), Bacillus sp. KSM-K16
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